PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cagra.2300s0004.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family CAMTA
Protein Properties Length: 1033aa    MW: 115598 Da    PI: 5.5902
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cagra.2300s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1182.54.8e-57201363118
                 CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          +e ++rwl++ ei++iL+n++++++++e++t+p+sgs+++++rk++ryfrkDG++w+kkkdgktv+E+he+LK g+v+vl+cyYah+++n
  Cagra.2300s0004.1.p  20 SEaRHRWLRPPEICEILQNYQRFQISTEPPTTPSSGSVFMFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKAGSVDVLHCYYAHGQDN 109
                          4449************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylevk 118
                          ++fqrr+ywlL+eel++iv+vhylevk
  Cagra.2300s0004.1.p 110 ENFQRRSYWLLQEELSHIVFVHYLEVK 136
                          ************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.70815141IPR005559CG-1 DNA-binding domain
SMARTSM010763.4E-8518136IPR005559CG-1 DNA-binding domain
PfamPF038591.0E-4921135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.6E-4464552IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.87E-16466551IPR014756Immunoglobulin E-set
PROSITE profilePS5029716.388628754IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.33E-15641757IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-15642757IPR020683Ankyrin repeat-containing domain
CDDcd002042.73E-11642754No hitNo description
PROSITE profilePS500889.164695727IPR002110Ankyrin repeat
SuperFamilySSF525401.51E-8850903IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.92852874IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.029854882IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041855873IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468876900IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-4878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MAEARRFSPV SELDVGQILS EARHRWLRPP EICEILQNYQ RFQISTEPPT TPSSGSVFMF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE NFQRRSYWLL  120
QEELSHIVFV HYLEVKGSRV STSVNRMQRS GDAARSPQET GEALTSEHDG YASCSFNQND  180
HSNFSQTTDS ASVNGFHTPE LEDAESAYNQ HGSSIVYSHQ ELQQPATGGN LTGYNPYYQV  240
SLTPRDSYQK EFRTIPITDS LVMVDKSKNI NSPGVTNGLK NRKSIDSQTW EEILGNCGSG  300
AEGIPLQPNS EHEVLDQILQ SSSFTMQDFA SLQESMIKSR NQQFNSGVTS ANAMWFQGQD  360
IEPNAISNLA SNEKAPYLST MKQHLLDGAL GEAGLKKMDS FNRWMSKELG DVGVIADANE  420
SFTQSSSRTY WEEVESEDGS NGHNSRRDLD GYIMSPSLSK EQLFSINEFS PSWAYVGCEV  480
VVFVTGKFLK TREEAEIGEW SCMFGQTEVP ADVIANGVLQ CVAPMHEAGR VPFYVTCSNR  540
LACSEVREFE YKVVESQIYD KETDDESTIE ILEARFVKLL CSKSESSTPV SGNDSDLSQV  600
SEKISLLLFE NDDQLDQMLM NEISQENMKK SLLQDVLKES LHSWLLQKIA EGGKGPSVLD  660
EGGQGVLHFA ASLGYNWALE PTILAGVSVD FRDVNGWTAL HWAAFFGRER IIGSLIALGA  720
APGTLTDPNP DFPSGSTPSD LAYANGHKGI AGYLSEYALR AHVSLLSLND KNAETVESAP  780
SPSSSSLTDS LTAVRNATQA AARIHQVFRA QSFQKKQLKE FGDRKLGMSE ERALSMLAPK  840
THKSGRAHSD DSVQAAAIRI QNKFRGYKGR KDYLITRQRI IKIQAHVRGY QVRKNYRKII  900
WSVGILEKVI LRWRRKGAGL RGFKSDALVD KMQDGTEKEE DDDFFKQGRK QTEERLQKAL  960
ARVKSMVQYP EARDQYRRLL NVVNDIQESK VEKALENSEG ATCFDDDLID IEALLGDDDT  1020
LMLPMSSSLW SN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5066970.0AF506697.1 Arabidopsis thaliana calmodulin-binding transcription factor SR1 (SR1) mRNA, complete cds.
GenBankAY5100250.0AY510025.1 Arabidopsis thaliana ethylene-induced calmodulin-binding protein 1 mRNA, complete cds.
GenBankBT0024590.0BT002459.1 Arabidopsis thaliana Unknown protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006295625.10.0hypothetical protein CARUB_v10024738mg
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLR0HWU60.0R0HWU6_9BRAS; Uncharacterized protein
STRINGAT2G22300.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1